pbcore.data

pbcore.data

pbcore.data.getBasH5_v20()
pbcore.data.getBasH5_v21()
pbcore.data.getBasH5s()
pbcore.data.getBaxH5_v20()
pbcore.data.getBaxH5_v21()
pbcore.data.getCCSH5()
pbcore.data.getCmpH5()

Returns the first cmp.h5 file in the list of available files. The returned value is a dictionary containing 2 keys: cmph5 and bash5s. The latter are the bash5s that were used to generate the cmp.h5 file.

pbcore.data.getCmpH5s()

Returns a list of dictionaries containing 2 keys: cmph5 and bash5s. The latter are the bash5s that were used to generate the cmp.h5 file.

pbcore.data.getFasta()

Returns the filename of an example FASTA file.

pbcore.data.getFofns()

Returns a list of FOFN files

pbcore.data.getGff3()

Returns the filename of an example GFFv3 file

pbcore.data.getTinyFasta()

Returns the filename of an example FASTA file.

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